Rhenium in PDB 2fnw: Pseudomonas Aeruginosa E2Q/H83Q/M109H-Azurin Re(Phen)(Co)3
Protein crystallography data
The structure of Pseudomonas Aeruginosa E2Q/H83Q/M109H-Azurin Re(Phen)(Co)3, PDB code: 2fnw
was solved by
C.Gradinaru,
B.R.Crane,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
1.40
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
30.935,
38.334,
48.835,
100.50,
106.25,
109.43
|
R / Rfree (%)
|
n/a /
23.6
|
Other elements in 2fnw:
The structure of Pseudomonas Aeruginosa E2Q/H83Q/M109H-Azurin Re(Phen)(Co)3 also contains other interesting chemical elements:
Rhenium Binding Sites:
The binding sites of Rhenium atom in the Pseudomonas Aeruginosa E2Q/H83Q/M109H-Azurin Re(Phen)(Co)3
(pdb code 2fnw). This binding sites where shown within
5.0 Angstroms radius around Rhenium atom.
In total 4 binding sites of Rhenium where determined in the
Pseudomonas Aeruginosa E2Q/H83Q/M109H-Azurin Re(Phen)(Co)3, PDB code: 2fnw:
Jump to Rhenium binding site number:
1;
2;
3;
4;
Rhenium binding site 1 out
of 4 in 2fnw
Go back to
Rhenium Binding Sites List in 2fnw
Rhenium binding site 1 out
of 4 in the Pseudomonas Aeruginosa E2Q/H83Q/M109H-Azurin Re(Phen)(Co)3
Mono view
Stereo pair view
|
A full contact list of Rhenium with other atoms in the Re binding
site number 1 of Pseudomonas Aeruginosa E2Q/H83Q/M109H-Azurin Re(Phen)(Co)3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Re801
b:15.1
occ:0.73
|
RE
|
A:REP801
|
0.0
|
15.1
|
0.7
|
C12
|
A:REP801
|
1.2
|
18.8
|
0.3
|
N2
|
A:REP801
|
1.2
|
18.6
|
0.3
|
C11
|
A:REP801
|
1.4
|
9.2
|
0.3
|
N1
|
A:REP801
|
1.7
|
9.8
|
0.3
|
C2
|
A:REP801
|
1.9
|
13.4
|
0.7
|
C1
|
A:REP801
|
2.0
|
14.4
|
0.7
|
C3
|
A:REP801
|
2.0
|
14.1
|
0.7
|
RE
|
A:REP801
|
2.1
|
28.1
|
0.3
|
NE2
|
A:HIS109
|
2.2
|
11.8
|
0.7
|
N1
|
A:REP801
|
2.2
|
33.7
|
0.7
|
N2
|
A:REP801
|
2.2
|
13.4
|
0.7
|
C16
|
A:REP801
|
2.5
|
19.1
|
0.3
|
C13
|
A:REP801
|
2.5
|
24.1
|
0.3
|
C1
|
A:REP801
|
2.6
|
24.4
|
0.3
|
C10
|
A:REP801
|
2.7
|
16.1
|
0.3
|
C7
|
A:REP801
|
3.0
|
20.8
|
0.3
|
C11
|
A:REP801
|
3.0
|
8.9
|
0.7
|
C12
|
A:REP801
|
3.0
|
8.1
|
0.7
|
O3
|
A:REP801
|
3.1
|
25.1
|
0.7
|
O1
|
A:REP801
|
3.1
|
20.7
|
0.7
|
O2
|
A:REP801
|
3.1
|
32.9
|
0.7
|
CE1
|
A:HIS109
|
3.2
|
20.9
|
0.7
|
C7
|
A:REP801
|
3.2
|
17.9
|
0.7
|
C16
|
A:REP801
|
3.2
|
19.3
|
0.7
|
NE2
|
A:HIS109
|
3.2
|
16.7
|
0.3
|
CD2
|
A:HIS109
|
3.2
|
8.6
|
0.7
|
C14
|
A:REP801
|
3.3
|
26.7
|
0.3
|
C15
|
A:REP801
|
3.3
|
22.2
|
0.3
|
C18
|
A:REP801
|
3.4
|
24.3
|
0.3
|
O1
|
A:REP801
|
3.5
|
47.3
|
0.3
|
C17
|
A:REP801
|
3.5
|
16.2
|
0.3
|
CE1
|
A:HIS109
|
3.6
|
21.1
|
0.3
|
C2
|
A:REP801
|
3.6
|
32.8
|
0.3
|
C9
|
A:REP801
|
3.7
|
22.6
|
0.3
|
O
|
A:HOH1148
|
3.8
|
16.7
|
1.0
|
C8
|
A:REP801
|
3.8
|
22.6
|
0.3
|
C3
|
A:REP801
|
3.8
|
14.0
|
0.3
|
CD2
|
A:HIS109
|
4.1
|
11.3
|
0.3
|
ND1
|
A:HIS109
|
4.3
|
19.7
|
0.7
|
O
|
A:HOH1042
|
4.3
|
30.2
|
1.0
|
C13
|
A:REP801
|
4.4
|
16.0
|
0.7
|
C10
|
A:REP801
|
4.4
|
14.8
|
0.7
|
CG
|
A:HIS109
|
4.4
|
8.1
|
0.7
|
C8
|
A:REP801
|
4.5
|
12.3
|
0.7
|
C15
|
A:REP801
|
4.5
|
10.5
|
0.7
|
ND1
|
A:HIS109
|
4.5
|
16.6
|
0.3
|
O2
|
A:REP801
|
4.7
|
43.4
|
0.3
|
CG
|
A:HIS109
|
4.7
|
16.7
|
0.3
|
O3
|
A:REP801
|
4.9
|
22.8
|
0.3
|
C14
|
A:REP801
|
4.9
|
11.7
|
0.7
|
C9
|
A:REP801
|
4.9
|
19.3
|
0.7
|
|
Rhenium binding site 2 out
of 4 in 2fnw
Go back to
Rhenium Binding Sites List in 2fnw
Rhenium binding site 2 out
of 4 in the Pseudomonas Aeruginosa E2Q/H83Q/M109H-Azurin Re(Phen)(Co)3
Mono view
Stereo pair view
|
A full contact list of Rhenium with other atoms in the Re binding
site number 2 of Pseudomonas Aeruginosa E2Q/H83Q/M109H-Azurin Re(Phen)(Co)3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Re801
b:28.1
occ:0.27
|
RE
|
A:REP801
|
0.0
|
28.1
|
0.3
|
N1
|
A:REP801
|
0.9
|
33.7
|
0.7
|
C7
|
A:REP801
|
1.7
|
17.9
|
0.7
|
C11
|
A:REP801
|
1.8
|
8.9
|
0.7
|
C1
|
A:REP801
|
1.9
|
24.4
|
0.3
|
C2
|
A:REP801
|
1.9
|
32.8
|
0.3
|
C3
|
A:REP801
|
2.0
|
14.0
|
0.3
|
RE
|
A:REP801
|
2.1
|
15.1
|
0.7
|
NE2
|
A:HIS109
|
2.2
|
16.7
|
0.3
|
NE2
|
A:HIS109
|
2.2
|
11.8
|
0.7
|
N1
|
A:REP801
|
2.2
|
9.8
|
0.3
|
N2
|
A:REP801
|
2.2
|
18.6
|
0.3
|
CE1
|
A:HIS109
|
2.5
|
20.9
|
0.7
|
C12
|
A:REP801
|
2.7
|
8.1
|
0.7
|
C8
|
A:REP801
|
2.8
|
12.3
|
0.7
|
N2
|
A:REP801
|
2.8
|
13.4
|
0.7
|
C10
|
A:REP801
|
2.8
|
14.8
|
0.7
|
C3
|
A:REP801
|
2.9
|
14.1
|
0.7
|
O
|
A:HOH1148
|
2.9
|
16.7
|
1.0
|
C11
|
A:REP801
|
3.0
|
9.2
|
0.3
|
C12
|
A:REP801
|
3.0
|
18.8
|
0.3
|
O3
|
A:REP801
|
3.1
|
22.8
|
0.3
|
O1
|
A:REP801
|
3.1
|
47.3
|
0.3
|
O2
|
A:REP801
|
3.1
|
43.4
|
0.3
|
CE1
|
A:HIS109
|
3.2
|
21.1
|
0.3
|
C7
|
A:REP801
|
3.2
|
20.8
|
0.3
|
C16
|
A:REP801
|
3.2
|
19.1
|
0.3
|
C9
|
A:REP801
|
3.2
|
19.3
|
0.7
|
CD2
|
A:HIS109
|
3.2
|
8.6
|
0.7
|
CD2
|
A:HIS109
|
3.2
|
11.3
|
0.3
|
C1
|
A:REP801
|
3.5
|
14.4
|
0.7
|
ND1
|
A:HIS109
|
3.6
|
19.7
|
0.7
|
O3
|
A:REP801
|
3.8
|
25.1
|
0.7
|
CB
|
A:ALA53
|
3.9
|
21.7
|
1.0
|
C2
|
A:REP801
|
3.9
|
13.4
|
0.7
|
C13
|
A:REP801
|
3.9
|
16.0
|
0.7
|
CG
|
A:HIS109
|
4.0
|
8.1
|
0.7
|
C17
|
A:REP801
|
4.0
|
18.6
|
0.7
|
C16
|
A:REP801
|
4.1
|
19.3
|
0.7
|
ND1
|
A:HIS109
|
4.2
|
16.6
|
0.3
|
CG
|
A:HIS109
|
4.2
|
16.7
|
0.3
|
C13
|
A:REP801
|
4.4
|
24.1
|
0.3
|
C10
|
A:REP801
|
4.4
|
16.1
|
0.3
|
C8
|
A:REP801
|
4.5
|
22.6
|
0.3
|
C18
|
A:REP801
|
4.5
|
25.1
|
0.7
|
C15
|
A:REP801
|
4.5
|
22.2
|
0.3
|
O1
|
A:REP801
|
4.5
|
20.7
|
0.7
|
C9
|
A:REP801
|
4.9
|
22.6
|
0.3
|
C14
|
A:REP801
|
4.9
|
26.7
|
0.3
|
C14
|
A:REP801
|
5.0
|
11.7
|
0.7
|
|
Rhenium binding site 3 out
of 4 in 2fnw
Go back to
Rhenium Binding Sites List in 2fnw
Rhenium binding site 3 out
of 4 in the Pseudomonas Aeruginosa E2Q/H83Q/M109H-Azurin Re(Phen)(Co)3
Mono view
Stereo pair view
|
A full contact list of Rhenium with other atoms in the Re binding
site number 3 of Pseudomonas Aeruginosa E2Q/H83Q/M109H-Azurin Re(Phen)(Co)3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Re802
b:21.4
occ:0.70
|
RE
|
B:REP802
|
0.0
|
21.4
|
0.7
|
N2
|
B:REP802
|
1.1
|
28.5
|
0.3
|
C16
|
B:REP802
|
1.8
|
19.6
|
0.3
|
C12
|
B:REP802
|
1.8
|
24.0
|
0.3
|
C2
|
B:REP802
|
1.9
|
18.0
|
0.7
|
C1
|
B:REP802
|
2.0
|
18.2
|
0.7
|
C3
|
B:REP802
|
2.0
|
38.9
|
0.7
|
NE2
|
B:HIS309
|
2.1
|
12.5
|
0.3
|
NE2
|
B:HIS309
|
2.2
|
14.2
|
0.7
|
N1
|
B:REP802
|
2.2
|
20.2
|
0.7
|
N2
|
B:REP802
|
2.2
|
22.4
|
0.7
|
RE
|
B:REP802
|
2.2
|
10.8
|
0.3
|
CE1
|
B:HIS309
|
2.4
|
12.3
|
0.3
|
C11
|
B:REP802
|
2.6
|
20.6
|
0.3
|
C15
|
B:REP802
|
2.6
|
23.1
|
0.3
|
C13
|
B:REP802
|
2.8
|
21.6
|
0.3
|
N1
|
B:REP802
|
2.8
|
15.9
|
0.3
|
C2
|
B:REP802
|
2.9
|
30.5
|
0.3
|
C11
|
B:REP802
|
3.0
|
15.5
|
0.7
|
C12
|
B:REP802
|
3.0
|
14.7
|
0.7
|
C14
|
B:REP802
|
3.0
|
27.6
|
0.3
|
O3
|
B:REP802
|
3.1
|
36.6
|
0.7
|
O1
|
B:REP802
|
3.1
|
21.1
|
0.7
|
O2
|
B:REP802
|
3.1
|
36.7
|
0.7
|
CE1
|
B:HIS309
|
3.2
|
22.0
|
0.7
|
C7
|
B:REP802
|
3.2
|
6.8
|
0.7
|
C16
|
B:REP802
|
3.2
|
13.5
|
0.7
|
CD2
|
B:HIS309
|
3.2
|
17.7
|
0.7
|
CD2
|
B:HIS309
|
3.3
|
19.6
|
0.3
|
ND1
|
B:HIS309
|
3.5
|
12.3
|
0.3
|
C1
|
B:REP802
|
3.6
|
4.5
|
0.3
|
O2
|
B:REP802
|
3.8
|
24.0
|
0.3
|
C10
|
B:REP802
|
3.9
|
18.9
|
0.3
|
C18
|
B:REP802
|
4.0
|
24.2
|
0.3
|
CG
|
B:HIS309
|
4.0
|
16.9
|
0.3
|
C3
|
B:REP802
|
4.0
|
7.7
|
0.3
|
C7
|
B:REP802
|
4.1
|
17.0
|
0.3
|
ND1
|
B:HIS309
|
4.3
|
22.7
|
0.7
|
CG
|
B:HIS309
|
4.3
|
15.3
|
0.7
|
C13
|
B:REP802
|
4.4
|
17.9
|
0.7
|
C10
|
B:REP802
|
4.4
|
11.1
|
0.7
|
C17
|
B:REP802
|
4.4
|
13.2
|
0.3
|
C8
|
B:REP802
|
4.5
|
11.6
|
0.7
|
C15
|
B:REP802
|
4.5
|
17.0
|
0.7
|
NZ
|
B:LYS322
|
4.6
|
51.0
|
1.0
|
O1
|
B:REP802
|
4.6
|
17.5
|
0.3
|
O
|
B:HOH1032
|
4.6
|
33.1
|
1.0
|
C14
|
B:REP802
|
4.9
|
20.6
|
0.7
|
C9
|
B:REP802
|
4.9
|
15.2
|
0.7
|
C9
|
B:REP802
|
5.0
|
11.0
|
0.3
|
|
Rhenium binding site 4 out
of 4 in 2fnw
Go back to
Rhenium Binding Sites List in 2fnw
Rhenium binding site 4 out
of 4 in the Pseudomonas Aeruginosa E2Q/H83Q/M109H-Azurin Re(Phen)(Co)3
Mono view
Stereo pair view
|
A full contact list of Rhenium with other atoms in the Re binding
site number 4 of Pseudomonas Aeruginosa E2Q/H83Q/M109H-Azurin Re(Phen)(Co)3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Re802
b:10.8
occ:0.30
|
RE
|
B:REP802
|
0.0
|
10.8
|
0.3
|
N1
|
B:REP802
|
1.0
|
20.2
|
0.7
|
C7
|
B:REP802
|
1.1
|
6.8
|
0.7
|
C1
|
B:REP802
|
1.9
|
4.5
|
0.3
|
C2
|
B:REP802
|
2.0
|
30.5
|
0.3
|
C3
|
B:REP802
|
2.0
|
7.7
|
0.3
|
NE2
|
B:HIS309
|
2.2
|
12.5
|
0.3
|
N1
|
B:REP802
|
2.2
|
15.9
|
0.3
|
N2
|
B:REP802
|
2.2
|
28.5
|
0.3
|
RE
|
B:REP802
|
2.2
|
21.4
|
0.7
|
C11
|
B:REP802
|
2.3
|
15.5
|
0.7
|
C8
|
B:REP802
|
2.4
|
11.6
|
0.7
|
C3
|
B:REP802
|
2.5
|
38.9
|
0.7
|
NE2
|
B:HIS309
|
2.7
|
14.2
|
0.7
|
CE1
|
B:HIS309
|
2.8
|
22.0
|
0.7
|
C11
|
B:REP802
|
3.0
|
20.6
|
0.3
|
C12
|
B:REP802
|
3.0
|
24.0
|
0.3
|
O3
|
B:REP802
|
3.1
|
21.9
|
0.3
|
O1
|
B:REP802
|
3.1
|
17.5
|
0.3
|
O2
|
B:REP802
|
3.1
|
24.0
|
0.3
|
CE1
|
B:HIS309
|
3.2
|
12.3
|
0.3
|
C7
|
B:REP802
|
3.2
|
17.0
|
0.3
|
C16
|
B:REP802
|
3.2
|
19.6
|
0.3
|
C10
|
B:REP802
|
3.2
|
11.1
|
0.7
|
C9
|
B:REP802
|
3.2
|
15.2
|
0.7
|
O3
|
B:REP802
|
3.2
|
36.6
|
0.7
|
C1
|
B:REP802
|
3.2
|
18.2
|
0.7
|
CD2
|
B:HIS309
|
3.2
|
19.6
|
0.3
|
C12
|
B:REP802
|
3.3
|
14.7
|
0.7
|
N2
|
B:REP802
|
3.4
|
22.4
|
0.7
|
ND1
|
B:HIS309
|
4.1
|
22.7
|
0.7
|
C2
|
B:REP802
|
4.1
|
18.0
|
0.7
|
CD2
|
B:HIS309
|
4.1
|
17.7
|
0.7
|
O1
|
B:REP802
|
4.2
|
21.1
|
0.7
|
ND1
|
B:HIS309
|
4.3
|
12.3
|
0.3
|
C13
|
B:REP802
|
4.4
|
21.6
|
0.3
|
C10
|
B:REP802
|
4.4
|
18.9
|
0.3
|
CG
|
B:HIS309
|
4.4
|
16.9
|
0.3
|
C15
|
B:REP802
|
4.5
|
23.1
|
0.3
|
C8
|
B:REP802
|
4.5
|
8.7
|
0.3
|
CB
|
B:ALA253
|
4.5
|
53.4
|
1.0
|
C17
|
B:REP802
|
4.5
|
11.6
|
0.7
|
C13
|
B:REP802
|
4.6
|
17.9
|
0.7
|
C16
|
B:REP802
|
4.7
|
13.5
|
0.7
|
CG
|
B:HIS309
|
4.7
|
15.3
|
0.7
|
C14
|
B:REP802
|
4.9
|
27.6
|
0.3
|
C9
|
B:REP802
|
4.9
|
11.0
|
0.3
|
|
Reference:
M.Busby,
C.Gradinaru,
B.R.Crane,
A.J.Di Bilio,
P.Matousek,
M.Towrie,
B.S.Leigh,
J.H.Richards,
A.Vlcek,
H.B.Gray.
Excited-State Dynamics of Structurally Characterized [Rei(Co)3(Phen)(Hisx)]+ (X = 83, 109) Pseudomonas Aeruginosa Azurins in Aqueous Solution. J.Am.Chem.Soc. V. 128 4365 2006.
ISSN: ISSN 0002-7863
PubMed: 16569013
DOI: 10.1021/JA057451+
Page generated: Thu Oct 10 12:23:32 2024
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