Rhenium in PDB 6ro3: 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf

All present enzymatic activity of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf:
3.2.1.17;

The structure of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf, PDB code: 6ro3 was solved by A.Brink, J.R.Helliwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.97 / 1.03
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.940, 79.940, 36.460, 90.00, 90.00, 90.00
R / Rfree (%)	11.1 / 11.8

The structure of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf also contains other interesting chemical elements:

Bromine	(Br)	1 atom
Chlorine	(Cl)	4 atoms
Sodium	(Na)	2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Rhenium atom in the 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf (pdb code 6ro3). This binding sites where shown within 5.0 Angstroms radius around Rhenium atom.
In total 16 binding sites of Rhenium where determined in the 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf, PDB code: 6ro3:
Jump to Rhenium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Rhenium binding site 1 out of 16 in the 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 1 of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re205 b:31.4 occ:0.27 OD2 A:ASP119 2.3 17.5 1.0 CG A:ASP119 3.3 16.1 1.0 OD1 A:ASP119 3.5 17.6 1.0 CB A:ASP119 4.6 14.3 1.0 N A:ALA122 4.9 12.8 1.0

Rhenium binding site 2 out of 16 in the 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 2 of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re206 b:10.9 occ:0.15 OE2 A:GLU7 2.1 16.3 1.0 NZ A:LYS1 2.2 10.8 0.5 CD A:GLU7 3.2 14.2 1.0 CE A:LYS1 3.2 13.3 0.5 CE A:LYS1 3.3 10.3 0.5 NZ A:LYS1 3.5 14.1 0.5 CG A:GLU7 3.6 12.8 1.0 O A:HOH355 3.8 21.7 1.0 OE1 A:GLU7 4.2 14.5 1.0 CE1 A:PHE3 4.5 9.7 1.0 O A:HOH321 4.5 15.3 1.0 CD A:LYS1 4.6 10.1 0.5 CD A:LYS1 4.6 12.3 0.5 O5 A:RRE211 4.8 11.9 0.8 CD1 A:PHE3 4.9 9.5 1.0

Rhenium binding site 3 out of 16 in the 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 3 of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re207 b:7.2 occ:0.75 RE1 A:KBW207 0.0 7.2 0.8 C9 A:KBW207 1.9 7.3 0.8 C5 A:KBW207 1.9 7.3 0.8 C7 A:KBW207 1.9 8.0 0.8 O1 A:KBW207 2.2 6.3 0.8 O5 A:KBW207 2.2 7.1 0.8 O3 A:KBW207 2.2 6.4 0.8 O12 A:KBW207 3.0 9.0 0.8 O9 A:KBW207 3.1 7.7 0.8 O2 A:KBW207 3.1 8.8 0.8 RE3 A:KBW207 3.4 7.5 0.8 RE2 A:KBW207 3.4 7.8 0.8 RE4 A:KBW207 3.4 6.4 0.8 O16 A:KBW207 3.7 6.5 0.8 C8 A:KBW207 4.0 7.5 0.8 O A:HOH305 4.0 16.5 1.0 C3 A:KBW207 4.0 8.5 0.8 C11 A:KBW207 4.0 6.3 0.8 O A:HOH376 4.1 5.9 1.0 O11 A:KBW207 4.7 9.7 0.8 O7 A:KBW207 4.7 10.2 0.8 O14 A:KBW207 4.8 7.5 0.8 C1 A:KBW207 4.9 7.8 0.8 C6 A:KBW207 5.0 8.4 0.8 C12 A:KBW207 5.0 6.0 0.8 C2 A:KBW207 5.0 8.9 0.8

Rhenium binding site 4 out of 16 in the 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 4 of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re207 b:7.8 occ:0.75 RE2 A:KBW207 0.0 7.8 0.8 C3 A:KBW207 1.9 8.5 0.8 C4 A:KBW207 1.9 8.1 0.8 C2 A:KBW207 1.9 8.9 0.8 O16 A:KBW207 2.2 6.5 0.8 O5 A:KBW207 2.2 7.1 0.8 O3 A:KBW207 2.2 6.4 0.8 O8 A:KBW207 3.0 9.8 0.8 O6 A:KBW207 3.0 9.2 0.8 O7 A:KBW207 3.0 10.2 0.8 RE4 A:KBW207 3.4 6.4 0.8 RE3 A:KBW207 3.4 7.5 0.8 RE1 A:KBW207 3.4 7.2 0.8 O1 A:KBW207 3.7 6.3 0.8 C10 A:KBW207 3.9 6.8 0.8 C6 A:KBW207 4.0 8.4 0.8 O A:PRO70 4.0 8.1 1.0 C7 A:KBW207 4.0 8.0 0.8 O A:HOH376 4.5 5.9 1.0 O13 A:KBW207 4.6 7.6 0.8 O10 A:KBW207 4.6 9.3 0.8 O2 A:KBW207 4.7 8.8 0.8 C11 A:KBW207 4.9 6.3 0.8 C12 A:KBW207 4.9 6.0 0.8 C5 A:KBW207 5.0 7.3 0.8 C9 A:KBW207 5.0 7.3 0.8 C1 A:KBW207 5.0 7.8 0.8

Rhenium binding site 5 out of 16 in the 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 5 of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re207 b:7.5 occ:0.75 RE3 A:KBW207 0.0 7.5 0.8 C1 A:KBW207 1.9 7.8 0.8 C8 A:KBW207 1.9 7.5 0.8 C6 A:KBW207 1.9 8.4 0.8 O1 A:KBW207 2.2 6.3 0.8 O16 A:KBW207 2.2 6.5 0.8 O5 A:KBW207 2.2 7.1 0.8 O11 A:KBW207 3.0 9.7 0.8 O10 A:KBW207 3.1 9.3 0.8 O4 A:KBW207 3.1 8.3 0.8 RE1 A:KBW207 3.4 7.2 0.8 RE4 A:KBW207 3.4 6.4 0.8 RE2 A:KBW207 3.4 7.8 0.8 O3 A:KBW207 3.7 6.4 0.8 O A:HOH305 3.8 16.5 1.0 C9 A:KBW207 3.9 7.3 0.8 C12 A:KBW207 3.9 6.0 0.8 C4 A:KBW207 4.0 8.1 0.8 O A:PRO70 4.1 8.1 1.0 O12 A:KBW207 4.6 9.0 0.8 O15 A:KBW207 4.6 6.5 0.8 O6 A:KBW207 4.7 9.2 0.8 C5 A:KBW207 4.9 7.3 0.8 CB A:PRO70 4.9 9.1 1.0 C7 A:KBW207 5.0 8.0 0.8 C10 A:KBW207 5.0 6.8 0.8 C3 A:KBW207 5.0 8.5 0.8 C11 A:KBW207 5.0 6.3 0.8 C2 A:KBW207 5.0 8.9 0.8

Rhenium binding site 6 out of 16 in the 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 6 of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re207 b:6.4 occ:0.75 RE4 A:KBW207 0.0 6.4 0.8 C11 A:KBW207 1.9 6.3 0.8 C12 A:KBW207 1.9 6.0 0.8 C10 A:KBW207 1.9 6.8 0.8 O16 A:KBW207 2.2 6.5 0.8 O3 A:KBW207 2.2 6.4 0.8 O1 A:KBW207 2.2 6.3 0.8 O14 A:KBW207 3.0 7.5 0.8 O13 A:KBW207 3.1 7.6 0.8 O15 A:KBW207 3.1 6.5 0.8 RE2 A:KBW207 3.4 7.8 0.8 RE3 A:KBW207 3.4 7.5 0.8 RE1 A:KBW207 3.4 7.2 0.8 O5 A:KBW207 3.7 7.1 0.8 O A:HOH305 3.9 16.5 1.0 C2 A:KBW207 3.9 8.9 0.8 C5 A:KBW207 3.9 7.3 0.8 C1 A:KBW207 3.9 7.8 0.8 O A:PRO70 4.0 8.1 1.0 O A:HOH376 4.4 5.9 1.0 O A:ASP48 4.5 9.6 1.0 O8 A:KBW207 4.6 9.8 0.8 O9 A:KBW207 4.6 7.7 0.8 O4 A:KBW207 4.6 8.3 0.8 CG2 A:THR69 4.8 6.5 1.0 C4 A:KBW207 4.9 8.1 0.8 C6 A:KBW207 5.0 8.4 0.8 C3 A:KBW207 5.0 8.5 0.8 C9 A:KBW207 5.0 7.3 0.8

Rhenium binding site 7 out of 16 in the 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 7 of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re208 b:8.8 occ:0.25 RE1 A:KBW208 0.0 8.8 0.2 C9 A:KBW208 1.9 9.4 0.0 C5 A:KBW208 1.9 9.4 0.0 C7 A:KBW208 1.9 9.2 0.0 O1 A:KBW208 2.2 7.3 0.2 O5 A:KBW208 2.2 7.5 0.2 O3 A:KBW208 2.2 7.0 0.2 O9 A:KBW208 3.1 9.8 0.0 O12 A:KBW208 3.1 9.7 0.0 O2 A:KBW208 3.1 9.5 0.0 RE4 A:KBW208 3.4 6.7 0.2 RE3 A:KBW208 3.4 6.7 0.2 RE2 A:KBW208 3.4 6.8 0.2 O16 A:KBW208 3.7 6.6 0.2 C11 A:KBW208 3.9 7.6 0.2 C3 A:KBW208 4.0 7.3 0.2 C8 A:KBW208 4.0 8.8 0.2 O4 A:RRE210 4.3 6.9 0.2 O11 A:RRE210 4.4 7.7 0.2 O14 A:KBW208 4.6 8.7 0.2 C4 A:RRE210 4.6 7.4 0.2 O7 A:KBW208 4.6 8.3 0.2 O11 A:KBW208 4.7 10.6 0.2 C12 A:KBW208 4.9 7.1 0.2 C1 A:KBW208 4.9 9.9 0.2 C10 A:KBW208 5.0 7.7 0.0 C2 A:KBW208 5.0 7.5 0.2 C6 A:KBW208 5.0 8.4 0.2 C4 A:KBW208 5.0 6.5 0.2

Rhenium binding site 8 out of 16 in the 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 8 of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re208 b:6.8 occ:0.25 RE2 A:KBW208 0.0 6.8 0.2 C3 A:KBW208 1.9 7.3 0.2 C4 A:KBW208 1.9 6.5 0.2 C2 A:KBW208 1.9 7.5 0.2 O16 A:KBW208 2.2 6.6 0.2 O5 A:KBW208 2.2 7.5 0.2 O3 A:KBW208 2.2 7.0 0.2 O7 A:KBW208 3.0 8.3 0.2 O6 A:KBW208 3.1 7.0 0.2 O8 A:KBW208 3.1 8.0 0.2 RE3 A:KBW208 3.4 6.7 0.2 RE4 A:KBW208 3.4 6.7 0.2 RE1 A:KBW208 3.4 8.8 0.2 O1 A:KBW208 3.7 7.3 0.2 C6 A:KBW208 3.9 8.4 0.2 C7 A:KBW208 3.9 9.2 0.0 C10 A:KBW208 4.0 7.7 0.0 O A:HOH363 4.3 15.8 1.0 O2 A:KBW208 4.6 9.5 0.0 O10 A:KBW208 4.6 9.7 0.2 O13 A:KBW208 4.6 8.3 0.0 CD A:ARG5 4.7 10.5 1.0 NE A:ARG5 4.7 10.7 1.0 CZ3 A:TRP123 4.8 10.6 1.0 C11 A:KBW208 4.9 7.6 0.2 O11 A:RRE210 4.9 7.7 0.2 C1 A:KBW208 4.9 9.9 0.2 C8 A:KBW208 5.0 8.8 0.2 C12 A:KBW208 5.0 7.1 0.2 C9 A:KBW208 5.0 9.4 0.0 C5 A:KBW208 5.0 9.4 0.0

Rhenium binding site 9 out of 16 in the 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 9 of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re208 b:6.7 occ:0.25 RE3 A:KBW208 0.0 6.7 0.2 C1 A:KBW208 1.9 9.9 0.2 C8 A:KBW208 1.9 8.8 0.2 C6 A:KBW208 1.9 8.4 0.2 O5 A:KBW208 2.2 7.5 0.2 O16 A:KBW208 2.2 6.6 0.2 O1 A:KBW208 2.2 7.3 0.2 O11 A:KBW208 3.1 10.6 0.2 O4 A:KBW208 3.1 11.4 0.2 O10 A:KBW208 3.1 9.7 0.2 RE2 A:KBW208 3.4 6.8 0.2 RE1 A:KBW208 3.4 8.8 0.2 RE4 A:KBW208 3.4 6.7 0.2 O3 A:KBW208 3.7 7.0 0.2 C4 A:KBW208 3.9 6.5 0.2 C12 A:KBW208 3.9 7.1 0.2 C9 A:KBW208 4.0 9.4 0.0 O A:HOH363 4.3 15.8 1.0 O11 A:RRE210 4.5 7.7 0.2 O6 A:KBW208 4.6 7.0 0.2 O15 A:KBW208 4.6 8.0 0.2 O12 A:KBW208 4.7 9.7 0.0 C3 A:KBW208 4.9 7.3 0.2 C5 A:KBW208 4.9 9.4 0.0 C2 A:KBW208 4.9 7.5 0.2 C10 A:KBW208 5.0 7.7 0.0 C7 A:KBW208 5.0 9.2 0.0 C11 A:KBW208 5.0 7.6 0.2

Rhenium binding site 10 out of 16 in the 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 10 of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re208 b:6.7 occ:0.25 RE4 A:KBW208 0.0 6.7 0.2 C12 A:KBW208 1.9 7.1 0.2 C11 A:KBW208 1.9 7.6 0.2 C10 A:KBW208 1.9 7.7 0.0 O3 A:KBW208 2.2 7.0 0.2 O16 A:KBW208 2.2 6.6 0.2 O1 A:KBW208 2.2 7.3 0.2 O15 A:KBW208 3.0 8.0 0.2 O14 A:KBW208 3.0 8.7 0.2 O13 A:KBW208 3.1 8.3 0.0 RE1 A:KBW208 3.4 8.8 0.2 RE2 A:KBW208 3.4 6.8 0.2 RE3 A:KBW208 3.4 6.7 0.2 O5 A:KBW208 3.7 7.5 0.2 C5 A:KBW208 3.9 9.4 0.0 C2 A:KBW208 3.9 7.5 0.2 C1 A:KBW208 4.0 9.9 0.2 O A:HOH363 4.2 15.8 1.0 O9 A:KBW208 4.6 9.8 0.0 O8 A:KBW208 4.6 8.0 0.2 O4 A:KBW208 4.6 11.4 0.2 C7 A:KBW208 4.9 9.2 0.0 C4 A:KBW208 5.0 6.5 0.2 C6 A:KBW208 5.0 8.4 0.2 C9 A:KBW208 5.0 9.4 0.0 C3 A:KBW208 5.0 7.3 0.2 C8 A:KBW208 5.0 8.8 0.2

A.Brink, J.R.Helliwell. Formation of A Highly Dense Tetra-Rhenium Cluster in A Protein Crystal and Its Implications in Medical Imaging. Iucrj V. 6 695 2019.
ISSN: ESSN 2052-2525
PubMed: 31316813
DOI: 10.1107/S2052252519006651