Rhenium in PDB 6ro5: 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf

All present enzymatic activity of 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf:
3.2.1.17;

The structure of 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf, PDB code: 6ro5 was solved by A.Brink, J.R.Helliwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.43 / 1.68
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	37.880, 78.650, 80.670, 90.00, 90.00, 90.00
R / Rfree (%)	24.1 / 27.3

The structure of 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf also contains other interesting chemical elements:

Chlorine	(Cl)	4 atoms
Sodium	(Na)	2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 39;

Binding sites:

The binding sites of Rhenium atom in the 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf (pdb code 6ro5). This binding sites where shown within 5.0 Angstroms radius around Rhenium atom.
In total 39 binding sites of Rhenium where determined in the 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf, PDB code: 6ro5:
Jump to Rhenium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Rhenium binding site 1 out of 39 in the 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 1 of 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re201 b:56.4 occ:0.27 RE A:RE202 3.2 46.4 0.3 OE2 A:GLU7 4.1 60.8 1.0 NZ A:LYS1 4.2 43.8 1.0

Rhenium binding site 2 out of 39 in the 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 2 of 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re202 b:46.4 occ:0.26 RE A:RE201 3.2 56.4 0.3 O6 A:RRE218 4.2 41.2 0.8 C6 A:RRE218 4.9 23.6 0.8 OE2 A:GLU7 4.9 60.8 1.0

Rhenium binding site 3 out of 39 in the 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 3 of 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re207 b:46.2 occ:0.20 O A:HOH304 2.5 31.4 1.0 OE1 A:GLU35 2.9 26.4 1.0 CD A:GLU35 3.9 32.3 1.0 OE2 A:GLU35 4.3 35.7 1.0 O A:GLU35 4.6 28.1 1.0 OD2 A:ASP52 4.6 34.8 1.0 CA A:GLU35 4.7 27.7 1.0 RE A:RE210 4.8 59.8 0.2 CG A:GLN57 4.8 29.5 1.0 OE1 A:GLN57 4.8 29.3 1.0 CB A:GLN57 4.9 22.1 1.0

Rhenium binding site 4 out of 39 in the 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 4 of 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re208 b:51.3 occ:0.30 OD2 A:ASP119 2.4 70.6 1.0 O A:HOH317 2.4 47.0 1.0 NH2 A:ARG125 2.5 47.4 1.0 CG A:ASP119 3.2 53.1 1.0 CZ A:ARG125 3.3 58.8 1.0 OD1 A:ASP119 3.4 65.3 1.0 NE A:ARG125 3.5 61.8 1.0 NH1 A:ARG125 4.4 33.7 1.0 CB A:ASP119 4.5 38.7 1.0 CD A:ARG125 4.9 54.4 1.0 N A:ALA122 5.0 48.4 1.0

Rhenium binding site 5 out of 39 in the 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 5 of 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re209 b:41.5 occ:0.35 O A:HOH325 2.1 28.2 1.0 OD1 A:ASP18 2.2 62.1 1.0 O A:HOH324 2.7 35.1 1.0 CG A:ASP18 2.9 40.0 1.0 OD2 A:ASP18 3.1 40.2 1.0 NZ A:LYS13 4.1 46.5 1.0 CE A:LYS13 4.3 44.8 1.0 CB A:ASP18 4.4 35.4 1.0 CB A:LEU25 4.8 36.2 1.0

Rhenium binding site 6 out of 39 in the 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 6 of 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re210 b:59.8 occ:0.21 OD2 A:ASP52 2.1 34.8 1.0 ND2 A:ASN46 2.9 42.8 1.0 CG A:ASP52 3.0 33.7 1.0 OD1 A:ASP52 3.2 34.7 1.0 CG A:ASN46 3.6 44.2 1.0 OD1 A:ASN46 3.7 44.9 1.0 ND2 A:ASN59 4.0 48.7 1.0 CB A:ASP52 4.4 22.1 1.0 O A:HOH304 4.5 31.4 1.0 RE A:RE207 4.8 46.2 0.2 CB A:ASN46 5.0 47.9 1.0

Rhenium binding site 7 out of 39 in the 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 7 of 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re211 b:41.3 occ:0.39 O A:LEU129 2.7 68.1 1.0 O5 A:QEB212 2.9 49.1 0.5 RE2 A:QEB212 3.1 61.5 0.5 OXT A:LEU129 3.3 64.8 1.0 C A:LEU129 3.4 56.9 1.0 RE3 A:QEB212 4.6 42.0 0.5 RE1 A:QEB212 4.6 51.0 0.5 O3 A:QEB212 4.6 48.4 0.5 O16 A:QEB212 4.6 51.7 0.5 NZ A:LYS13 4.7 46.5 1.0 CA A:LEU129 4.9 63.4 1.0

Rhenium binding site 8 out of 39 in the 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 8 of 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re212 b:51.0 occ:0.50 RE1 A:QEB212 0.0 51.0 0.5 O1 A:QEB212 2.2 52.8 0.5 O5 A:QEB212 2.2 49.1 0.5 O3 A:QEB212 2.2 48.4 0.5 O A:LEU129 2.8 68.1 1.0 RE3 A:QEB212 3.4 42.0 0.5 RE4 A:QEB212 3.4 44.1 0.5 RE2 A:QEB212 3.4 61.5 0.5 N A:LEU129 3.5 67.8 1.0 O16 A:QEB212 3.7 51.7 0.5 C A:LEU129 3.8 56.9 1.0 O A:CYS127 4.0 58.6 1.0 CA A:LEU129 4.1 63.4 1.0 C A:ARG128 4.4 69.2 1.0 CB A:LEU129 4.4 60.8 1.0 CA A:ARG128 4.5 72.0 1.0 RE A:RE211 4.6 41.3 0.4 OXT A:LEU129 4.8 64.8 1.0

Rhenium binding site 9 out of 39 in the 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 9 of 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re212 b:61.5 occ:0.50 RE2 A:QEB212 0.0 61.5 0.5 O16 A:QEB212 2.2 51.7 0.5 O3 A:QEB212 2.2 48.4 0.5 O5 A:QEB212 2.2 49.1 0.5 RE A:RE211 3.1 41.3 0.4 RE4 A:QEB212 3.4 44.1 0.5 RE3 A:QEB212 3.4 42.0 0.5 RE1 A:QEB212 3.4 51.0 0.5 O A:LEU129 3.6 68.1 1.0 O1 A:QEB212 3.7 52.8 0.5 C A:LEU129 4.8 56.9 1.0

Rhenium binding site 10 out of 39 in the 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf


Mono view


Stereo pair view

A full contact list of Rhenium with other atoms in the Re binding site number 10 of 1YR-Y: Lysozyme with Re Cluster 1 Year on Shelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Re212 b:42.0 occ:0.50 RE3 A:QEB212 0.0 42.0 0.5 O5 A:QEB212 2.2 49.1 0.5 O1 A:QEB212 2.2 52.8 0.5 O16 A:QEB212 2.2 51.7 0.5 RE1 A:QEB212 3.4 51.0 0.5 RE2 A:QEB212 3.4 61.5 0.5 RE4 A:QEB212 3.5 44.1 0.5 O3 A:QEB212 3.7 48.4 0.5 RE A:RE211 4.6 41.3 0.4 O A:LEU129 4.8 68.1 1.0

A.Brink, J.R.Helliwell. Formation of A Highly Dense Tetra-Rhenium Cluster in A Protein Crystal and Its Implications in Medical Imaging. Iucrj V. 6 695 2019.
ISSN: ESSN 2052-2525
PubMed: 31316813
DOI: 10.1107/S2052252519006651